GastroPy

A Python package for electrogastrography (EGG) signal processing and gastric-brain coupling analysis.

GastroPy provides a complete scientific pipeline for EGG research, from raw data import through signal processing to advanced gastric-brain coupling analyses.

Getting Started

• Installation
  • Requirements
  • Install from PyPI
  • Optional Dependencies
  • Development Installation
• Getting Started
  • Sample Datasets
  • Importing Your Own Data
  • Processing an EGG Signal
  • Step-by-Step Processing
  • Artifact Removal & Detection
  • Channel Selection & Multi-Channel Processing
  • Visualization
  • fMRI-Concurrent EGG
  • Time-Frequency Analysis
  • Gastric-Brain Coupling
  • What’s Next

API Reference

• API Reference
  • EGG — Core Pipeline
  • Signal — DSP Utilities
  • Signal — Preprocessing & Artifact Removal
  • Metrics — Rhythm Quantification
  • Time-Frequency — Per-Band Decomposition
  • Coupling — Phase Coupling Analysis
  • IO — BIDS Physio I/O
  • Data — Sample Datasets
  • Viz — Visualization
  • Neuro — Neuroimaging Utilities

Tutorials

• Tutorials
  • EGG Signal Processing with GastroPy
  • Multi-Channel EGG Analysis: A Complete Pipeline Tutorial
  • Gastric-Brain Coupling with GastroPy
  • Gastric-Brain Coupling with Real fMRI Data

Examples

• Examples
  • Visualization
  • Processing
  • Coupling

Development

• Contributing to GastroPy
  • Ways to Contribute
  • Development Setup
  • Workflow
  • Code Style
  • Testing
  • Documentation
  • Architecture Guidelines
  • CI Checks
  • Commit Messages
  • Releases
  • Questions?

Indices and tables

• Index

• Module Index

• Search Page