gastropy.plot_glass_brain

gastropy.plot_glass_brain#

gastropy.plot_glass_brain(data, affine=None, threshold=None, title='Gastric-Brain Coupling', cmap='YlOrRd', **kwargs)[source]#

Plot a coupling map as a transparent glass brain.

Wrapper around nilearn.plotting.plot_glass_brain for quick overview visualizations of coupling results.

Parameters:

  • data (np.ndarray or nibabel.Nifti1Image) – 3D coupling volume. If a numpy array, affine must be provided.

  • affine (np.ndarray, optional) – 4x4 affine matrix. Required if data is a numpy array.

  • threshold (float, optional) – Values below this threshold are not displayed.

  • title (str, optional) – Plot title.

  • cmap (str, optional) – Matplotlib colormap. Default is "YlOrRd".

  • **kwargs – Additional arguments passed to nilearn.plotting.plot_glass_brain.

Returns:

display – Nilearn display object for further customization.

Return type:

nilearn.plotting.displays.OrthoProjector

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